PCI Genomics

Title

A pipeline to detect the relationship between transposable elements and adjacent genes in host genomesuse asterix (*) to get italics

Authors

Caroline Meguerditchian, Ayse Ergun, Veronique Decroocq, Marie Lefebvre, Quynh-Trang BuiPlease use the format "First name initials family name" as in "Marie S. Curie, Niels H. D. Bohr, Albert Einstein, John R. R. Tolkien, Donna T. Strickland"

Year

2021

Picture

Abstract

<p>Understanding the relationship between transposable elements (TEs) and their closest positional genes in the host genome is a key point to explore their potential role in genome evolution. Transposable elements can regulate and affect gene expression not only because of their mobility within the genome but also because of their transcriptional activity. A comprehensive knowledge of structural organization between transposable elements and neighboring genes is important to study TE functional role in gene regulation. We implemented a pipeline to display the relationship between the distribution of TEs and adjacent genes in host genomes. Our tool is freely available here: https://github.com/marieBvr/TEs_genes_relationship_pipeline.</p>

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https://doi.org/10.5281/zenodo.4442377You should fill this box only if you chose 'Codes have been used in this study'. URL must start with http:// or https://

Keywords

Transposable element, Gene, Genome, Bioinformatics, Pipeline

Thematic fields

Bioinformatics, Viruses and transposable elements

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Submission date

2021-03-03 15:08:34

Recommender

Emmanuelle Lerat

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