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LukProt: A database of eukaryotic predicted proteins designed for investigations of animal originsuse asterix (*) to get italics
Łukasz F. SobalaPlease use the format "First name initials family name" as in "Marie S. Curie, Niels H. D. Bohr, Albert Einstein, John R. R. Tolkien, Donna T. Strickland"
2024
<p>The origins and early evolution of animals is a subject with many outstanding questions. One problem faced by researchers trying to answer them is the absence of a comprehensive database of sequences from non-bilaterians. Publicly available data is plentiful but scattered and often not associated with proper metadata. A new database presented in this paper, LukProt, is an attempt at solving this issue. The database contains protein sequences obtained mostly from genomic, transcriptomic and metagenomic studies and is an extension of EukProt (a collection of eukaryotic sequences from all known clades). LukProt adopts and extends EukProt naming conventions and includes data from 216 additional animals. The database is associated with a taxogroup scheme suitable for studying early animal evolution. Minor updates to the database will contain species additions or metadata corrections and major updates will synchronize LukProt to each new version of EukProt. All public LukProt releases are permanently stored on Zenodo. A BLAST server to search the database is available at <a href="https://lukprot.hirszfeld.pl/">https://lukprot.hirszfeld.pl/</a>. The community is invited to participate in maintaining and correcting LukProt. As it can be searched without downloading locally, the database can be a convenient resource not only for evolutionary biologists, but the broader scientific community as well.</p>
https://zenodo.org/doi/10.5281/zenodo.7089120, https://zenodo.org/doi/10.5281/zenodo.10580774You should fill this box only if you chose 'All or part of the results presented in this preprint are based on data'. URL must start with http:// or https://
https://zenodo.org/doi/10.5281/zenodo.10580774You should fill this box only if you chose 'Scripts were used to obtain or analyze the results'. URL must start with http:// or https://
https://zenodo.org/doi/10.5281/zenodo.10654583You should fill this box only if you chose 'Codes have been used in this study'. URL must start with http:// or https://
EukProt, LukProt, database, evolution, animals, Metazoa, eukaryote, proteome, dataset
NonePlease indicate the methods that may require specialised expertise during the peer review process (use a comma to separate various required expertises).
Bioinformatics, Evolutionary genomics, Marine invertebrates
No need for them to be recommenders of PCI Genomics. Please do not suggest reviewers for whom there might be a conflict of interest. Reviewers are not allowed to review preprints written by close colleagues (with whom they have published in the last four years, with whom they have received joint funding in the last four years, or with whom they are currently writing a manuscript, or submitting a grant proposal), or by family members, friends, or anyone for whom bias might affect the nature of the review - see the code of conduct
Inaki Ruiz-Trillo (inaki.ruiz@ibe.upf-csic.es), Pawel Burkhardt (pawel.burkhardt@uib.no)e.g. John Doe [john@doe.com]
2024-02-02 13:04:31
Javier del Campo
Anonymous, Giacomo Mutti , Anonymous